Configuration

rna_predict reads the config file ~/.rna_predict/sysconfig if present.

Rosetta path and suffix

By default, rna_predict searches for the Rosetta binaries in the PATH environment variable and assumes .linuxgccrelease as binary suffix. This can be overridden in the config file as follows:

[rosetta]
exe_path = /path/to/rosetta/directory/bin/
exe_suffix =

Other options

Currently, there is only one other option to control buffering of the output of called programs. To enable line-buffered output, set the following:

[rna_predict]
subprocess_buffsize = L

Note that this is done by prefixing all commands with stdbuf -<option> and therefore requires the stdbuf program to be available.